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Before upgrading you should disable INNODB STRICT MODE by launching in MySQL CLI:
SET SESSION innodb_strict_mode=OFF;
Update source code from last version branch (replace X.X.X by the latest release)
git pull origin X.X.X
Launch in MySQL the SQL scripts in mysql/init/ corresponding to the superior versions order by the version number.
Example : If your current version is 0.0.12, launch init-0.0.13.sql then init-0.0.14.sql then init-0.0.15.sql then …